Merge branch '18-patch-module-issues' into 'main'

Resolve "Patch module issues"

Closes #18

See merge request pjm363/why-senior-project!7

WHY/WHY.egg-info/PKG-INFO

-Metadata-Version: 2.1
-Name: WHY
-Version: 0.0.1.dev0+5059977
-Summary: Explainable AI system
-Home-page: https://gitlab.cci.drexel.edu/pjm363/why-senior-project
-Author: Philip Monaco, Abdullah Shah, Ibrahim Elsaid, Jashanpreet Singh, William Lu, Songheng Li
-License: LICENSE.md
-Description: # WHY Senior Project
-        
-        ## Installing WHY
-        
-        There are two way in which the `WHY` package can be installed.
-        First, follow the [prerequisite](#prerequisites) instructions.
-        IF you do not need to rebuild documentation or make modifications to the library, follow the instructions under [User Installation](#user-installation).
-        Otherwise, follow the instructions under [Developer Installation](#developer-installation).
-        
-        ### Prerequisites
-        
-        The `WHY` requires at least `python3.8` and makes use of a number of third-party libraries. The bare minimum packages are automatically installed when you install `WHY` using `pip`. Additional dependencies for developers are contained in `requirements.txt` file. See the
-        
-        It's recommended that you use `WHY` within a python virtual environment. 
-        Virtual environments are now included natively with Python 3 using `venv`. Instructions to create a virtual environment can be found [here](https://docs.python.org/3/library/venv.html).  
-        
-        API documentation requires the use of `sphinx` which will require installing `Cmake`.  Installation instructions can be found [here](https://cmake.org/install/).
-        
-        ### User Installation
-        
-        First you must clone the repository using the following bash command.
-        ```bash
-        pip clone git@gitlab.cci.drexel.edu:pjm363/why-senior-project.git
-        ```
-        
-        From the root path of the repository (the folder where `setup.py` is located) `WHY` can be installed using `pip` using the following command. 
-        
-        ```bash
-        pip install .
-        ```
-        
-        ### Developer Installation
-        Developers need an additional tool, `clang-format` in order to run the precommit script. 
-        
-        Install via Ubuntu.
-        ```bash 
-        apt-get install clang-format
-        ```
-        Install via MacOSX with homebrew.
-        ```bash
-        brew install clang-format
-        ```
-        Install via [installer](https://llvm.org/builds/) or using chocolatey via.
-        ```bash
-        choco install llvm
-        ```
-        
-        ## Building API Documentation
-        
-        To build the API Documentation in HTML format for local browsing, execute the following from the root of the repository.
-        ```
-        cd docs/
-        make html
-        ```
-        
-        This will also cause any examples contained in `examples` to be generated in the example gallery.  
-        All documentation is also built automatically when the `./precommit.sh` script is run.
-        
-Platform: UNKNOWN
-Requires-Python: >=3.8
-Description-Content-Type: text/markdown
-Provides-Extra: lint
-Provides-Extra: docs
-Provides-Extra: all

WHY/WHY.egg-info/SOURCES.txt

-README.md
-setup.py
-src/WHY.egg-info/PKG-INFO
-src/WHY.egg-info/SOURCES.txt
-src/WHY.egg-info/dependency_links.txt
-src/WHY.egg-info/not-zip-safe
-src/WHY.egg-info/requires.txt
-src/WHY.egg-info/top_level.txt
\ No newline at end of file

WHY/WHY.egg-info/dependency_links.txt

-

WHY/WHY.egg-info/not-zip-safe

-

WHY/WHY.egg-info/requires.txt

-numpy>=1.21
-pandas>=1.3.5
-bokeh>=2.4.2
-matplotlib>=3.5.0
-scikit-learn>=1.0.2
-
-[all]
-numpy>=1.21
-pandas>=1.3.5
-bokeh>=2.4.2
-matplotlib>=3.5.0
-scikit-learn>=1.0.2
-black==21.12b0
-isort==5.10.1
-flake8==4.0.1
-mypy
-Sphinx
-sphinx-gallery
-sphinx-rtd-theme
-m2r2
-
-[docs]
-Sphinx
-sphinx-gallery
-sphinx-rtd-theme
-m2r2
-
-[lint]
-black==21.12b0
-isort==5.10.1
-flake8==4.0.1
-mypy

WHY/WHY.egg-info/top_level.txt

-

examples/README.rst

+# WHY Senior Project
+
+## Installing WHY
+
+There are two way in which the `WHY` package can be installed.
+First, follow the [prerequisite](#prerequisites) instructions.
+IF you do not need to rebuild documentation or make modifications to the library, follow the instructions under [User Installation](#user-installation).
+Otherwise, follow the instructions under [Developer Installation](#developer-installation).
+
+### Prerequisites
+
+The `WHY` requires at least `python3.8` and makes use of a number of third-party libraries. The bare minimum packages are automatically installed when you install `WHY` using `pip`. Additional dependencies for developers are contained in `requirements.txt` file. See the
+
+It's recommended that you use `WHY` within a python virtual environment. 
+Virtual environments are now included natively with Python 3 using `venv`. Instructions to create a virtual environment can be found [here](https://docs.python.org/3/library/venv.html).  
+
+API documentation requires the use of `sphinx` which will require installing `Cmake`.  Installation instructions can be found [here](https://cmake.org/install/).
+
+### User Installation
+
+First you must clone the repository using the following bash command.
+```bash
+pip clone git@gitlab.cci.drexel.edu:pjm363/why-senior-project.git
+```
+
+From the root path of the repository (the folder where `setup.py` is located) `WHY` can be installed using `pip` using the following command. 
+
+```bash
+pip install .
+```
+
+### Developer Installation
+Developers need an additional tool, `clang-format` in order to run the precommit script. 
+
+Install via Ubuntu.
+```bash 
+apt-get install clang-format
+```
+Install via MacOSX with homebrew.
+```bash
+brew install clang-format
+```
+Install via [installer](https://llvm.org/builds/) or using chocolatey via.
+```bash
+choco install llvm
+```
+### Bokeh Server Developer Mode
+To automatically update the server with the new scripts run the following in the command line:
+
+Linux/MacOs
+```bash
+bokeh serve --show app_name.py --dev
+```
+
+Windows
+```bash
+python -m bokeh serve --show app_name.py --dev
+```
+
+
+## Building API Documentation
+
+To build the API Documentation in HTML format for local browsing, execute the following from the root of the repository.
+```
+cd docs/
+make html
+```
+
+This will also cause any examples contained in `examples` to be generated in the example gallery.  
+All documentation is also built automatically when the `./precommit.sh` script is run.
\ No newline at end of file

examples/decision_tree/main.py

@@ -3,9 +3,9 @@ import numpy as np
 from sklearn.tree import export_graphviz
 from subprocess import call
 
-from WHY.synthetic import SyntheticData, update_samples_or_dataset
-from WHY.data_vis import vis_synthetic
-import WHY.config as config
+from synthetic import *
+from data_vis import *
+import config as config
 
 from bokeh.io import curdoc
 from bokeh.models import ColumnDataSource, Select, Slider, Plot, Scatter, Row, Column